In John 20:27, Jesus says to Thomas
"Put your finger here and look at My hands. Reach out your hand and put it into My side. Stop doubting and believe."
echoing the claim by Thomas at John 20:25 that
"Unless I see the nail marks in His hands, and put my finger where the nails have been, and put my hand into His side, I will never believe."
There are 2 main interpretations of this exchange. The first is that Jesus indeed still has wounds, and is telling Thomas he can put his finger or hand into them. This is a bit gross, but it is the standard view. The second is that Jesus was speaking ironically, echoing Thomas' original comments, because Jesus' resurrected body is completely healed of the physical trauma inflicted by the crucifixion.
If we assume the former theory, was Jesus' injured but resurrected body covered by clothes that would have covered his side wound?