NET Bible Acts 8:39
Now when they came up out of the water, the Spirit of the Lord snatched Philip away, and the eunuch did not see him any more, but went on his way rejoicing.
Verb - Aorist Indicative Active - 3rd Person Singular
Strong's Greek 726: To seize, snatch, obtain by robbery. From a derivative of haireomai; to seize.
There is a kind of this transport prototype in the OT with Elijah and Elisha in 2 Kings
2:11 As they were walking along and talking together, suddenly a chariot of fire and horses of fire appeared and separated the two of them, and Elijah went up to heaven in a whirlwind. 12 Elisha saw this and cried out, “My father! My father! The chariots and horsemen of Israel!” And Elisha saw him no more.
Five verses later, the action is described as a pick up by the Spirit.
16 "Look," they said, "we your servants have fifty able men. Let them go and look for your master. Perhaps the Spirit of the LORD has picked him up and set him down on some mountain or in some valley."
In both cases, they never saw each other again. Yes, I would say that Philip was transported by the Spirit in a supernatural way.